X Zhu, X Han, Z Li, X Zhou, SH Yoo, Z Chen, Z Ji*, CircaKB: a comprehensive knowledgebase of circadian genes across multiple species, Nucleic Acids Research, 2024. [JCR 1区, IF=16.6]

Y Deng, Z Ji, Y Wang, SK Zhou, OS-SSVEP: One-shot SSVEP classification, Neural Networks, 2024. [JCR 1区, IF=6]

L Lan, G Hu, R Li, T Wang, L Jiang, J Luo, Z Ji, Y Wang, Machine Learning for Selecting Important Clinical Markers of Imaging Subgroups of Cerebral Small Vessel Disease Based on a Common Data Model, Tsinghua Science and Technology, 2024. [JCR 1区, IF=6.6]

K Yan, C Lu, X Ma, Z Ji, J Huang, Intelligent fault diagnosis for air handing units based on improved generative adversarial network and deep reinforcement learning, Expert Systems with Applications, 2023. [JCR 1区, IF=8.665]

Y Zhu, Z Liu, Y Liu, Z Ji*, D Yu*, ULDNA: Integrating Unsupervised Multi-Source Language Models with LSTM-Attention Network for High-Accuracy Protein-DNA Binding Site Prediction, Briefings in Bioinformatics, 2024.  [JCR 1区, IF=9.5]

Z Wang, X Xie, S Liu, Z Ji*. scFseCluster: A Feature Selection Enhanced Clustering for Single Cell RNA-seq Data, 2023. Life Science Alliance [JCR 1区, IF=4.5]

K Yan, Xi Guo, Z Ji, X Zhou, Deep Transfer Learning for Cross-Species Plant Disease Diagnosis Adapting Mixed Subdomains. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2023. [JCR 2区,IF=3.702]

S Xie, X Xie, X Zhao, F Liu, Y Wang, J Ping, Z Ji*. HNSPPI: A Hybrid Computational Model Combing Network and Sequence Information for Predicting Protein-Protein Interaction. Briefings in Bioinformatics, 2023. [JCR 1区, IF=13.994]

X Xie, F Xia, Y Wu, S Liu, K Yan, H Xu, Z Ji*. A novel Feature Selection Strategy Based on Enhanced Slap Swarm Algorithm for Diseased Plant Classification. Plant Phenomics, 2023. [JCR 1区，IF=6.995]

Z Ji^#, J Mims^#, N Devarie-Baez, J Lewis, H Wu, K Shukla, E Lopez, V Vitvitsky, C Key, M Kemp, R Banerjee, J Parks, A Tsang, X Zhou*, C Furdui*. Redox Integration of Signaling and Metabolism in a Head and Neck Cancer Model of Radiation Resistance using COSM^RO. Frontiers in Oncology, 2023. [JCR 2区，IF=6.244]

Z Ji*, K Yan, X Xie, Y Xiang, J Huang. A Space-embedding Strategy for Anomaly Detection in Multivariate Time Series. Expert Systems with Applications, 2022. [JCR 1区, IF=8.665]

E Kim, Y Kim, Z Ji, J Kang, K Ono, M Wirianto, K Paudel, J Kim, K Mahan, X Zhou, H Lee, J Yoo, S Yoo, Z Chen, ROR activation by Nobiletin enhances anti-tumor efficacy via suppression of IκB/NF-κB signaling in triple-negative breast cancer. Cell Death & Disease, 2022. [JCR 1区, IF=9.685]

F Xia, X Xie, S Jin, K Yan, Z Ji*, A Novel Image Clustering Approach for Plant Disease Diagnosis. Frontiers in Plant Science, 2022. [JCR 1区, IF=6.627]

X Xie, X Gu, Y Li, Z Ji*, K-size partial reduct: positive region optimization for attribute reduction. Knowledge-based Systems, 2021, 228: 107253. [JCR 1区, IF=8.139]

Z Ji*, C Liu, W Zhao, C Soto, X Zhou*, Multi-scale modeling for systematically understanding the key roles of microglia in AD development. Computers in Biology and Medicine, 2021, 133: 104374. [JCR 1区, IF=7.7]

T Sun, Y Guo, L Zhao, M Fan, N Huang, M Tian, Q Liu, J Huang, Z Liu, Y Zhao, Z Ji, J Ping*, Evolution of the PB1 gene of human influenza A(H3N2) viruses circulating between 1968 and 2019. Transboundary and Emerging Diseases, 2021. [JCR 1区, IF=4.521]

X Zhao, H Li, S Lyu, J Zhai, Z Ji, et al., Single-cell transcriptomics reveals heterogeneous progression and EGFR activation in pancreatic adenosquamous carcinoma. International Journal of Biological Sciences, 2021, 17: 2590-2605. [JCR 1区, IF =10.750]

N Jin, Y Zeng, K Yan, Z Ji, Multivariate Air Quality Forecasting with Nested LSTM Neural Network, IEEE Transactions on Industrial Informatics, 2021, 17 (12): 8514-8522. [JCR 1区, IF=11.648]

H Hu, Q Guan, S Chen, Z Ji*, L Yao, Detection and recognition for life state of cell cancer using two-stage cascade CNNs. IEEE/ACM transactions on computational biology and bioinformatics, 2020, 17 (3): 887-898. [JCR 2区,IF=3.702]

K Yan, J Huang, W Shen, Z Ji*, Unsupervised learning for fault detection and diagnosis of air handling units. Energy and Buildings, 2020, 210: 109689. [JCR 1区, IF=7.201]

Z Ji, W Zhao, HK Lin, X Zhou, Systematically understanding the immunity leading to CRPC progression. PLoS Computational Biology, 2019, 15(9), e1007344. [JCR 1区, IF=4.779]

K Yan, Z Ji*, H Lu, J Huang, W Shen, Y Xue, Fast and accurate classification of time series data using extended ELM: Application in fault diagnosis of air handling units. IEEE Transactions on Systems, Man, and Cybernetics: Systems, 2019, 49 (7), 1349-1356. [JCR 1区, IF=11.471, ESI high cited]

M Hu, X Feng, Z Ji*, K Yan, S Zhou, A novel computational approach for discord search with local recurrence rates in multivariate time series. Information Sciences, 2019, 477, 220-233. [JCR 1区, IF=8.233]